Egg Quesadilla Recipe

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This egg quesadilla recipe is crispy, cheesy, and cooked with an egg in the center for a fun breakfast or brunch idea. It is made with flour tortillas, cheddar, Monterey Jack, a fresh tomato topping, and creamy avocado.

Close-up of Egg-In-A-Hole Quesadillas with tomato, onion, jalapeño, avocado, and a runny egg yolk.

The tortilla gets golden and crisp in the skillet while the cheese melts inside. The egg cooks right in the center, giving you a warm, filling quesadilla that feels special but is still easy enough for a quick morning meal.

Serve this breakfast quesadilla with avocado, lime juice, salsa, hot sauce, sour cream, or fresh cilantro. For another crispy tortilla meal, try this Chicken Quesadilla.

Why You’ll Love This Recipe

  • Crispy tortillas with melted cheese.
  • A fun egg-in-the-center breakfast idea.
  • Fresh tomato, onion, jalapeño, and lime topping.
  • Great for breakfast, brunch, or lunch.
  • Easy to customize with your favorite cheese or toppings.

Ingredients for Egg Quesadilla

For the Fresh Tomato Topping

  • 1 plum tomato, finely chopped
  • 1/4 cup red onion, minced
  • 2 tablespoons jalapeño, minced
  • 1 tablespoon lime juice
  • Kosher salt, to taste
  • Freshly ground black pepper, to taste

For the Quesadillas

  • 2 flour tortillas
  • 1/2 cup grated cheddar cheese
  • 1/2 cup grated Monterey Jack cheese
  • 1 tablespoon green onion, sliced, plus more for serving
  • 1 tablespoon extra-virgin olive oil
  • 1 large egg
  • Diced avocado, for serving
Ingredients for Egg-In-A-Hole Quesadillas with tortillas, egg, avocado, tomato, onion, jalapeño, cheese, lime juice, olive oil, salt, and black pepper.
Simple ingredients for homemade egg quesadillas.

Ingredient Notes and Substitutions

Flour Tortillas

Use medium flour tortillas so they fit easily in the pan. Soft tortillas work best because they fold and toast evenly.

Egg

One large egg goes in the center of the quesadilla. Cook it until the white is set and the yolk is still soft, or cook longer if you prefer a firm yolk.

Cheddar Cheese

Cheddar adds sharp, bold flavor. You can use mild, medium, or sharp cheddar.

Monterey Jack Cheese

Monterey Jack melts smoothly and makes the quesadilla extra creamy. Cheddar adds sharper flavor, so using both cheeses gives the best balance of melt and taste. For smoother melting, grate cheese from a block when possible instead of using pre-shredded cheese. See this guide to the best melting cheeses for more helpful tips.

Tomato, Onion, and Jalapeño

For another fresh tomato topping with lime, cilantro, onion, and jalapeño, try this Pico de Gallo. It is a bright Mexican salsa that works well with tacos, quesadillas, and tortilla chips.

Avocado

Avocado adds a creamy fresh finish. Add it right before serving so it stays bright and fresh. If you need to cut the avocado slightly ahead of time, squeeze a little lime juice over the cut surface and cover it tightly to help slow browning. See this guide to keeping avocado fresh for more helpful tips.

How to Make an Egg Quesadilla

  • Make the tomato topping.
    In a small bowl, mix the chopped tomato, red onion, jalapeño, lime juice, salt, and black pepper. Set aside while you make the quesadilla.
  • Prepare the tortillas.
    Place one tortilla on a cutting board. Use a round cutter or small glass to cut a hole in the center of one tortilla.
  • Add cheese.
    Heat a skillet over medium heat. Add a little olive oil, then place one whole tortilla in the pan. Sprinkle cheddar, Monterey Jack, and green onion over the tortilla.
  • Add the top tortilla.
    Place the tortilla with the hole on top of the cheese. Cook until the bottom tortilla starts to turn golden and the cheese begins to melt.
Step-by-step process for making tomato jalapeño topping and adding cheese between tortillas in a skillet.
Make the fresh topping and start the cheese quesadilla.
  • Add the egg.
    Crack the egg into the hole in the center of the tortilla. Season with salt and black pepper.For another easy breakfast made with eggs and bread, try this Bread Omelette Recipe. It is cooked in one pan with cheese, vegetables, and crisp golden toast.
  • Cook the quesadilla.
    Cook until the egg white starts to set. Carefully flip if needed, or cover the pan for a few minutes to help the egg cook through while the cheese melts.
Step-by-step process showing a hole cut in a tortilla and an egg cooked in the center of the quesadilla.
Cut the tortilla hole and cook the egg in the center.
  • Serve.
    Transfer the quesadilla to a plate. Top with the tomato mixture, diced avocado, and extra green onion if desired. Serve warm.
Close-up of the egg center in Egg-In-A-Hole Quesadillas with avocado and fresh tomato salsa.
Soft egg center with fresh toppings on a crispy quesadilla.

Expert Tips for the Best Egg Quesadilla

  • Use medium heat so the tortilla gets golden without burning.
  • Do not overfill with cheese, or it can leak out too much.
  • Cut the tortilla hole before adding it to the skillet.
  • Cover the pan briefly if the egg needs help cooking.
  • Use a nonstick skillet for easier flipping.
  • Season the egg directly with salt and pepper.
  • Serve right away while the cheese is melted.
  • Add avocado at the end so it stays fresh.

Storage and Reheating

Egg quesadillas are best served fresh because the tortilla stays crisp and the egg has the best texture right after cooking.

If you have leftovers, store them in an airtight container in the refrigerator for up to 1 day.

Reheat in a skillet over low heat until warm. Avoid microwaving for too long because the tortilla can become soft and the egg can overcook.

The fresh tomato topping and avocado are best stored separately.

Freezing is not recommended for this recipe.

Can I Make This as a Breakfast Quesadilla?

Yes. This egg quesadilla works perfectly as a breakfast quesadilla because it has eggs, cheese, tortillas, avocado, and fresh salsa-style topping. You can also add cooked bacon, breakfast sausage, spinach, or bell peppers if you want it more filling.

Can I Make This Egg Quesadilla with Scrambled Eggs?

Yes. If you do not want a soft yolk, scramble the egg first, then add it inside the tortilla with the cheese. Cook until the tortilla is golden and the cheese melts. This version is easier to flip and works well for kids or meal prep.

Why This Egg Quesadilla Works

This egg quesadilla is different from a regular breakfast quesadilla because the egg cooks directly in the center of the tortilla. The cheese melts around it, the tortilla turns crisp, and the fresh tomato topping keeps the whole dish bright instead of heavy.

It gives you the flavor of a cheesy breakfast quesadilla with the fun look of an egg-in-a-hole recipe, all made in one skillet.

Variations

Spicy Egg Quesadilla

Use pepper Jack cheese and add extra jalapeño or hot sauce.

Bacon Breakfast Quesadilla

Add cooked chopped bacon before adding the top tortilla.

Vegetarian Quesadilla

Add sautéed bell peppers, spinach, or mushrooms with the cheese.

Avocado Salsa Quesadilla

Mix diced avocado directly into the tomato topping before serving.

Extra Cheesy Quesadilla

Add more Monterey Jack or use a Mexican cheese blend.

Close-up of Egg-In-A-Hole Quesadillas with tomato, onion, jalapeño, avocado, and a runny egg yolk.

Egg-In-A-Hole Quesadillas

Egg-In-A-Hole Quesadillas are crispy cheese quesadillas cooked with an egg in the center and topped with fresh tomato salsa and avocado. They are cheesy, filling, and perfect for breakfast or brunch.
Prep Time 10 minutes
Cook Time 10 minutes
rest time 0 minutes
Total Time 20 minutes
Servings: 1
Course: Breakfast, Brunch
Cuisine: American, Mexican-Inspired
Calories: 690

Ingredients
  

For the Fresh Tomato Topping
  • 1 plum tomato finely chopped
  • 1/4 cup red onion minced
  • 2 tablespoons jalapeño minced
  • 1 tablespoon lime juice
  • Kosher salt to taste
  • Freshly ground black pepper to taste
For the Quesadillas
  • 2 flour tortillas
  • 1/2 cup grated cheddar cheese
  • 1/2 cup grated Monterey Jack cheese
  • 1 tablespoon green onion sliced, plus more for serving
  • 1 tablespoon extra-virgin olive oil
  • 1 large egg
  • Diced avocado for serving

Equipment

  • Nonstick skillet
  • Cutting board
  • Knife
  • Small bowl
  • Round cutter or small glass
  • Spatula

Method
 

  1. In a small bowl, mix the tomato, red onion, jalapeño, lime juice, salt, and black pepper. Set aside.
  2. Cut a round hole in the center of one tortilla using a small glass or round cutter.
  3. Heat olive oil in a nonstick skillet over medium heat.
  4. Place the whole tortilla in the skillet and sprinkle with cheddar, Monterey Jack, and green onion.
  5. Place the tortilla with the hole on top.
  6. Crack the egg into the center hole and season with salt and black pepper.
  7. Cook until the tortilla is golden, the cheese is melted, and the egg white is set. Cover the pan briefly if needed.
  8. Transfer to a plate and top with the tomato mixture, diced avocado, and extra green onion. Serve warm.

Nutrition

Calories: 690kcalCarbohydrates: 38gProtein: 27gFat: 49gSaturated Fat: 19gCholesterol: 265mgSodium: 980mgPotassium: 680mgFiber: 7gSugar: 5gVitamin A: 1500IUVitamin C: 20mgCalcium: 620mgIron: 4mg

Video

Notes

  • Use medium heat so the tortilla browns without burning.
  • Covering the pan helps the egg cook gently.
  • For a firmer yolk, cook a few minutes longer.
  • Serve immediately for the best crispy texture.

Tried this recipe?

Let us know how it was!

Best Fillings for Egg Quesadillas

Egg quesadillas are easy to customize with cooked bacon, breakfast sausage, sautéed spinach, bell peppers, mushrooms, black beans, corn, jalapeños, or extra cheese. Keep the fillings light so the tortilla stays crisp and the quesadilla is easy to flip.

Common Mistakes To Avoid

  • Cutting the tortilla hole too large, which can make the quesadilla fall apart.
  • Using too much cheese, so it leaks out while cooking.
  • Cooking over high heat and burning the tortilla before the egg sets.
  • Cracking the egg before the tortilla is stable in the pan.
  • Flipping the quesadilla too early.
  • Overcooking the egg if you want a soft or runny yolk.
  • Adding the tomato topping too early, which can make the quesadilla soggy.

How to Make This Egg Quesadilla More Filling

To make this egg quesadilla more filling, add cooked bacon, breakfast sausage, black beans, sautéed peppers, spinach, or extra cheese. Keep the filling thin and evenly spread so the tortilla still gets crispy and the quesadilla is easy to flip.

What to Serve With Egg Quesadillas

Serve egg quesadillas with sour cream, salsa, hot sauce, guacamole, fresh fruit, breakfast potatoes, refried beans, or a simple side salad.

They also work well as a breakfast quesadilla with iced coffee, fresh orange juice, lemonade, or a smoothie for brunch. For a creamy fruit drink, serve them with this Strawberry Banana Smoothie.

FAQs

Can I make egg quesadillas without jalapeño?

Yes. You can leave out the jalapeño or replace it with green bell pepper for a mild topping.

Can I use corn tortillas?

Flour tortillas work better because they are softer and easier to handle, but corn tortillas can work if they are large and flexible.

How do I keep the egg yolk runny?

Cook over medium-low heat and remove the quesadilla once the egg white is set but the yolk still looks glossy.

What cheese melts best for this recipe?

Monterey Jack melts very well. Cheddar adds flavor, so using both gives the best texture and taste.

Can I make this recipe ahead of time?

It is best fresh. You can prepare the tomato topping ahead, but cook the quesadilla and egg right before serving.

Can I add bacon to this egg quesadilla?

Yes. Add cooked chopped bacon with the cheese before adding the top tortilla. It makes the quesadilla more filling and gives it a smoky breakfast flavor.

Can I make an egg quesadilla with scrambled eggs?

Yes. Scramble the egg first, then add it inside the tortilla with the cheese. This is easier if you do not want a runny yolk.

Is this a breakfast quesadilla?

Yes. This recipe works as a breakfast quesadilla because it is made with eggs, cheese, tortillas, avocado, and fresh toppings.

How do I flip an egg quesadilla without breaking it?

Use a wide spatula and cook the quesadilla until the bottom tortilla is golden and the cheese has started to melt. If the egg is still loose, cover the pan for a minute before flipping or cook it without flipping until the egg white sets.

Estimated reading time: 9 minutes

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